IQ-TREE multicore version 1.6.12 for Linux 64-bit built Aug 15 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    fermat (AVX2, FMA3, 1009 GB RAM)
Command: ../../iqtree -s Pettalidae_16S_mafft.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    25604 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Jun 15 22:53:05 2022
Kernel:  AVX+FMA - 1 threads (128 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 128 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Pettalidae_16S_mafft.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 95 sequences with 564 columns, 482 distinct patterns
359 parsimony-informative, 67 singleton sites, 138 constant sites
                                             Gap/Ambiguity  Composition  p-value
   1  Limulus_polyphemus                            17.02%    failed      0.00%
   2  Cyphophthalmus_duricorius_MCZ-135009          15.96%    passed      5.66%
   3  Paramiopsalis_ramulosus_MCZ-135006            18.79%    failed      1.04%
   4  Parasiro_coiffaiti_MCZ-132372                 26.77%    failed      0.00%
   5  Parasiro_minor_MCZ-132374                     14.36%    failed      0.00%
   6  Suzukielus_sauteri_MCZ-132256                 15.96%    passed     61.28%
   7  Metasiro_savannahensis_MCZ-134557             17.91%    failed      0.02%
   8  Aoraki_westlandica_MCZ-134653                 14.36%    passed     83.06%
   9  Aoraki_crypta_MCZ-101289                      19.50%    passed     73.93%
  10  Aoraki_denticulata_denticulata_MCZ-134642     14.18%    passed     79.99%
  11  Aoraki_denticulata_denticulata_MCZ-134647_4   27.84%    passed     62.21%
  12  Aoraki_denticulata_denticulata_MCZ-134639_1   28.19%    passed     79.70%
  13  Aoraki_denticulata_denticulata_MCZ-134646_1   27.84%    passed     76.60%
  14  Aoraki_denticulata_denticulata_MCZ-134659_1   27.13%    passed     91.38%
  15  Aoraki_denticulata_major_MCZ-134644           13.65%    passed     94.30%
  16  Aoraki_denticulata_major_MCZ-35669            13.83%    passed     94.31%
  17  Aoraki_granulosa_MCZ-134675                   17.73%    passed     96.88%
  18  Aoraki_granulosa_MCZ-134684                   14.36%    passed     88.33%
  19  Aoraki_healyi_MCZ-134638                      15.07%    passed     71.09%
  20  Aoraki_longitarsa_MCZ-35659                   13.30%    passed     95.30%
  21  Aoraki_tumidata_MCZ-133838                    15.43%    passed     74.64%
  22  Archaeopurcellia_eureka_162243                14.36%    passed     27.69%
  23  Archaeopurcellia_eureka_162249                14.36%    passed     27.69%
  24  Austropurcellia_acuta_MCZ-134701              15.25%    failed      0.00%
  25  Austropurcellia_arcticosa_MCZ-132325          15.25%    passed     96.36%
  26  Austropurcellia_clousei_MCZ-132339            14.89%    failed      0.24%
  27  Austropurcellia_culminis_MCZ-132322           14.54%    passed     88.37%
  28  Austropurcellia_despectata_MCZ-132324         14.18%    passed     72.61%
  29  Austropurcellia_giribeti_MCZ-132337           13.83%    passed     77.62%
  30  Austropurcellia_scoparia_MCZ-134700           14.18%    passed     16.24%
  31  Austropurcellia_sharmai_MCZ-134698            14.36%    passed     85.25%
  32  Austropurcellia_vicina_MCZ-132318             13.48%    passed     89.69%
  33  Chileogovea_jocasta_MCZ-134713                15.25%    passed     64.73%
  34  Chileogovea_jocasta_MCZ-134714                14.89%    passed     45.28%
  35  Chileogovea_jocasta_MCZ-134715                14.89%    passed     38.74%
  36  Chileogovea_oedipus_MCZ-134709                15.25%    passed     81.40%
  37  Chileogovea_oedipus_MCZ-134710                15.25%    passed     81.40%
  38  Chileogovea_oedipus_MCZ-134711                15.25%    passed     81.40%
  39  Chileogovea_oedipus_MCZ-134712                15.25%    passed     81.40%
  40  Karripurcellia_harveyi_MCZ-132345             13.48%    passed     62.71%
  41  Karripurcellia_peckorum_MCZ-134719            13.30%    passed     46.83%
  42  Karripurcellia_peckorum_MCZ-134720            23.94%    passed     26.11%
  43  Karripurcellia_peckorum_MCZ-134721            19.15%    passed     34.44%
  44  Neopurcellia_salmoni_MCZ-29317                15.60%    passed     73.26%
  45  Neopurcellia_salmoni_MCZ-134739               15.60%    passed     73.26%
  46  Neopurcellia_salmoni_MCZ-134741               15.60%    passed     73.26%
  47  Parapurcellia_amatola_MCZ-133841              15.07%    passed      5.46%
  48  Parapurcellia_convexa_MCZ-134744              15.25%    passed     77.57%
  49  Parapurcellia_convexa_MCZ-128902              15.25%    passed     82.74%
  50  Parapurcellia_fissa_MCZ-134745                15.96%    passed     66.20%
  51  Parapurcellia_minuta_MCZ-134747               15.60%    failed      4.60%
  52  Parapurcellia_rumpiana_MCZ-134748             15.60%    passed     67.36%
  53  Parapurcellia_silvicola_MCZ-134742_1          14.89%    passed     36.15%
  54  Parapurcellia_silvicola_MCZ-134742_2          15.60%    passed     52.03%
  55  Parapurcellia_staregai_MCZ-134746             15.07%    passed     82.86%
  56  Pettalus_thwaitesi_MCZ-101223                 13.48%    passed     34.88%
  57  Pettalus_sp_MCZ-132353                        14.18%    passed     13.10%
  58  Pettalus_sp_MCZ-132354                        13.65%    passed     39.03%
  59  Pettalus_sp_MCZ-132357                        14.89%    passed     43.22%
  60  Pettalus_sp_MCZ-132359                        13.65%    passed     45.28%
  61  Pettalus_sp_MCZ-132360                        15.07%    passed     49.47%
  62  Pettalus_sp_MCZ-134967                        15.07%    passed     85.58%
  63  Purcellia_argasiformis_MCZ-134759             14.54%    passed     42.23%
  64  Purcellia_argasiformis_MCZ-134762             14.72%    passed     42.40%
  65  Purcellia_griswoldi_MCZ-134756                12.23%    passed     41.19%
  66  Purcellia_illustrans_MCZ-60635                14.36%    passed     63.40%
  67  Purcellia_leleupi_MCZ-129098                  13.12%    passed     73.81%
  68  Purcellia_sp_MCZ-128897                       19.50%    passed     33.68%
  69  Purcellia_sp_MCZ-129493                       13.12%    passed     36.74%
  70  Purcellia_sp_129494                           13.65%    passed     56.79%
  71  Rakaia_antipodiana_MCZ-134580                 16.49%    passed     79.68%
  72  Rakaia_australis_MCZ-134592                   16.31%    passed     57.30%
  73  Rakaia_collaris_MCZ-134574                    16.84%    passed     48.88%
  74  Rakaia_digitata_MCZ-134571                    16.49%    passed     94.17%
  75  Rakaia_dorothea_MCZ-134577                    19.68%    passed     20.09%
  76  Rakaia_florensis_MCZ-134588                   14.89%    passed     43.43%
  77  Rakaia_lindsayi_MCZ-134598                    14.72%    passed     53.19%
  78  Rakaia_macra_MCZ-134582                       16.31%    passed     75.40%
  79  Rakaia_media_MCZ-134581                       15.96%    passed     44.36%
  80  Rakaia_media_MCZ-134605                       15.60%    passed     72.06%
  81  Rakaia_minutissima_MCZ-29280                  15.60%    passed     98.52%
  82  Rakaia_minutissima_MCZ-134591                 16.84%    passed     93.17%
  83  Rakaia_pauli_MCZ-134576                       20.74%    passed     55.63%
  84  Rakaia_solitaria_MCZ-134585                   15.60%    passed     38.52%
  85  Rakaia_sorenseni_MCZ-134567                   16.67%    passed     35.17%
  86  Rakaia_stewartiensis_MCZ-134599               24.11%    passed     10.31%
  87  Rakaia_sp_MCZ-35662                           16.13%    passed     82.94%
  88  Rakaia_sp_MCZ-35668                           16.67%    passed     74.73%
  89  Rakaia_sp_MCZ-100753                          16.13%    passed     41.54%
  90  Rakaia_sp_MCZ-129612                          16.13%    passed     48.69%
  91  Rakaia_sp_MCZ-129614                          16.31%    passed     38.96%
  92  Rakaia_sp_MCZ-133847                          15.78%    passed     36.60%
  93  Rakaia_sp_MCZ-133849                          16.49%    passed     49.78%
  94  Rakaia_sp_MCZ-134575                          16.13%    passed     33.11%
  95  Rakaia_sp_MCZ-134584                          16.13%    passed     49.23%
****  TOTAL                                         16.24%  8 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: Chileogovea_oedipus_MCZ-134710 is identical to Chileogovea_oedipus_MCZ-134709 but kept for subsequent analysis
NOTE: Chileogovea_oedipus_MCZ-134712 is identical to Chileogovea_oedipus_MCZ-134711 but kept for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134739 is identical to Neopurcellia_salmoni_MCZ-29317 but kept for subsequent analysis
NOTE: 1 identical sequences (see below) will be ignored for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134741 (identical to Neopurcellia_salmoni_MCZ-29317) is ignored but added at the end

For your convenience alignment with unique sequences printed to Pettalidae_16S_mafft.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.010 seconds
NOTE: ModelFinder requires 16 MB RAM!
ModelFinder will test 286 DNA models (sample size: 564) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            19555.541    185 39481.082    39663.145    40283.067
  2  JC+I          18823.727    186 38019.453    38203.973    38825.773
  3  JC+G4         17809.140    186 35990.280    36174.800    36796.600
  4  JC+I+G4       17791.164    187 35956.329    36143.329    36766.984
  5  JC+R2         18035.564    187 36445.127    36632.127    37255.782
  6  JC+R3         17832.199    189 36042.398    36234.430    36861.723
  7  JC+R4         17787.748    191 35957.496    36154.657    36785.491
  8  JC+R5         17786.921    193 35959.842    36162.231    36796.507
 14  F81+F         18816.951    188 38009.902    38199.406    38824.892
 15  F81+F+I       17954.150    189 36286.299    36478.332    37105.625
 16  F81+F+G4      16678.630    189 33735.259    33927.291    34554.584
 17  F81+F+I+G4    16656.895    190 33693.790    33888.375    34517.451
 18  F81+F+R2      17008.659    190 34397.318    34591.903    35220.979
 19  F81+F+R3      16733.410    192 33850.819    34050.582    34683.150
 20  F81+F+R4      16673.842    194 33735.685    33940.726    34576.685
 21  F81+F+R5      16672.146    196 33736.292    33946.712    34585.963
 27  K2P           19548.680    186 39469.360    39653.880    40275.680
 28  K2P+I         18816.278    187 38006.557    38193.557    38817.212
 29  K2P+G4        17804.207    187 35982.413    36169.413    36793.069
 30  K2P+I+G4      17786.498    188 35948.996    36138.500    36763.986
 31  K2P+R2        18020.454    188 36416.907    36606.411    37231.898
 32  K2P+R3        17811.437    190 36002.874    36197.459    36826.534
 33  K2P+R4        17781.480    192 35946.960    36146.723    36779.291
 34  K2P+R5        17781.224    194 35950.449    36155.489    36791.449
 40  HKY+F         18782.945    189 37943.890    38135.922    38763.215
 41  HKY+F+I       17890.129    190 36160.257    36354.842    36983.918
 42  HKY+F+G4      16518.905    190 33417.810    33612.394    34241.470
 43  HKY+F+I+G4    16500.093    191 33382.185    33579.347    34210.181
 44  HKY+F+R2      16899.688    191 34181.376    34378.537    35009.371
 45  HKY+F+R3      16585.100    193 33556.201    33758.590    34392.866
 46  HKY+F+R4      16528.782    195 33447.564    33655.282    34292.900
 47  HKY+F+R5      16527.249    197 33448.499    33661.646    34302.505
 53  TNe           19454.434    187 39282.868    39469.868    40093.523
 54  TNe+I         18717.626    188 37811.251    38000.755    38626.241
 55  TNe+G4        17698.596    188 35773.192    35962.696    36588.182
 56  TNe+I+G4      17683.774    189 35745.548    35937.580    36564.874
 57  TNe+R2        17943.196    189 36264.393    36456.425    37083.718
 58  TNe+R3        17704.508    191 35791.015    35988.176    36619.010
 59  TNe+R4        17682.527    193 35751.055    35953.444    36587.720
 60  TNe+R5        17678.915    195 35747.830    35955.547    36593.165
 66  TN+F          18765.280    190 37910.560    38105.144    38734.220
 67  TN+F+I        17874.077    191 36130.154    36327.315    36958.149
 68  TN+F+G4       16515.792    191 33413.584    33610.745    34241.579
 69  TN+F+I+G4     16493.859    192 33371.718    33571.481    34204.048
 70  TN+F+R2       16896.709    192 34177.417    34377.180    35009.748
 71  TN+F+R3       16571.983    194 33531.967    33737.008    34372.967
 72  TN+F+R4       16518.691    196 33429.382    33639.802    34279.053
 73  TN+F+R5       16511.434    198 33418.867    33634.769    34277.208
 74  TN+F+R6       16511.414    200 33422.829    33644.316    34289.840
 79  K3P           18926.507    187 38227.014    38414.014    39037.669
 80  K3P+I         18175.830    188 36727.659    36917.163    37542.650
 81  K3P+G4        17093.397    188 34562.795    34752.299    35377.785
 82  K3P+I+G4      17074.965    189 34527.930    34719.962    35347.255
 83  K3P+R2        17331.503    189 35041.007    35233.039    35860.332
 84  K3P+R3        17105.125    191 34592.250    34789.411    35420.245
 85  K3P+R4        17070.923    193 34527.845    34730.234    35364.511
 86  K3P+R5        17069.188    195 34528.377    34736.094    35373.712
 92  K3Pu+F        18618.132    190 37616.264    37810.849    38439.925
 93  K3Pu+F+I      17781.785    191 35945.571    36142.732    36773.566
 94  K3Pu+F+G4     16474.832    191 33331.665    33528.826    34159.660
 95  K3Pu+F+I+G4   16453.846    192 33291.692    33491.455    34124.023
 96  K3Pu+F+R2     16820.126    192 34024.252    34224.014    34856.582
 97  K3Pu+F+R3     16528.116    194 33444.232    33649.273    34285.233
 98  K3Pu+F+R4     16466.281    196 33324.562    33534.982    34174.233
 99  K3Pu+F+R5     16464.470    198 33324.941    33540.842    34183.281
105  TPM2+F        18669.048    190 37718.096    37912.680    38541.756
106  TPM2+F+I      17826.969    191 36035.937    36233.098    36863.933
107  TPM2+F+G4     16491.741    191 33365.483    33562.644    34193.478
108  TPM2+F+I+G4   16474.061    192 33332.122    33531.885    34164.453
109  TPM2+F+R2     16855.148    192 34094.296    34294.058    34926.626
110  TPM2+F+R3     16551.734    194 33491.468    33696.509    34332.469
111  TPM2+F+R4     16490.029    196 33372.057    33582.477    34221.728
112  TPM2+F+R5     16487.571    198 33371.143    33587.044    34229.483
118  TPM2u+F       18669.049    190 37718.098    37912.682    38541.758
119  TPM2u+F+I     17826.970    191 36035.940    36233.102    36863.936
120  TPM2u+F+G4    16491.743    191 33365.486    33562.647    34193.481
121  TPM2u+F+I+G4  16474.067    192 33332.133    33531.896    34164.464
122  TPM2u+F+R2    16855.165    192 34094.331    34294.093    34926.661
123  TPM2u+F+R3    16551.489    194 33490.978    33696.019    34331.979
124  TPM2u+F+R4    16490.024    196 33372.049    33582.468    34221.720
125  TPM2u+F+R5    16487.571    198 33371.141    33587.043    34229.482
131  TPM3+F        18637.213    190 37654.425    37849.010    38478.086
132  TPM3+F+I      17792.757    191 35967.515    36164.676    36795.510
133  TPM3+F+G4     16498.674    191 33379.348    33576.509    34207.343
134  TPM3+F+I+G4   16475.166    192 33334.332    33534.094    34166.662
135  TPM3+F+R2     16844.800    192 34073.599    34273.362    34905.930
136  TPM3+F+R3     16548.894    194 33485.789    33690.829    34326.789
137  TPM3+F+R4     16489.957    196 33371.914    33582.334    34221.585
138  TPM3+F+R5     16487.659    198 33371.318    33587.219    34229.658
144  TPM3u+F       18637.212    190 37654.424    37849.009    38478.085
145  TPM3u+F+I     17792.757    191 35967.514    36164.675    36795.509
146  TPM3u+F+G4    16498.674    191 33379.349    33576.510    34207.344
147  TPM3u+F+I+G4  16475.162    192 33334.324    33534.087    34166.655
148  TPM3u+F+R2    16844.839    192 34073.679    34273.441    34906.009
149  TPM3u+F+R3    16548.894    194 33485.788    33690.829    34326.789
150  TPM3u+F+R4    16489.962    196 33371.924    33582.344    34221.595
151  TPM3u+F+R5    16487.651    198 33371.303    33587.204    34229.643
157  TIMe          18827.262    188 38030.525    38220.029    38845.515
158  TIMe+I        18071.933    189 36521.865    36713.898    37341.191
159  TIMe+G4       16981.774    189 34341.547    34533.579    35160.872
160  TIMe+I+G4     16967.691    190 34315.383    34509.967    35139.043
161  TIMe+R2       17249.425    190 34878.850    35073.435    35702.511
162  TIMe+R3       16991.781    192 34367.561    34567.324    35199.892
163  TIMe+R4       16967.164    194 34322.328    34527.368    35163.328
164  TIMe+R5       16962.572    196 34317.145    34527.564    35166.815
170  TIM+F         18600.008    191 37582.017    37779.178    38410.012
171  TIM+F+I       17765.417    192 35914.833    36114.596    36747.164
172  TIM+F+G4      16471.187    192 33326.375    33526.137    34158.705
173  TIM+F+I+G4    16446.069    193 33278.137    33480.526    34114.803
174  TIM+F+R2      16818.084    193 34022.168    34224.557    34858.833
175  TIM+F+R3      16514.222    195 33418.445    33626.162    34263.780
176  TIM+F+R4      16458.440    197 33310.880    33524.028    34164.886
177  TIM+F+R5      16457.013    199 33312.026    33530.708    34174.702
183  TIM2e         19085.757    188 38547.513    38737.017    39362.503
184  TIM2e+I       18446.024    189 37270.048    37462.080    38089.373
185  TIM2e+G4      17418.907    189 35215.814    35407.846    36035.139
186  TIM2e+I+G4    17405.874    190 35191.748    35386.333    36015.409
187  TIM2e+R2      17687.359    190 35754.719    35949.303    36578.379
188  TIM2e+R3      17429.223    192 35242.447    35442.210    36074.777
189  TIM2e+R4      17400.731    194 35189.462    35394.502    36030.462
190  TIM2e+R5      17399.296    196 35190.593    35401.012    36040.263
196  TIM2+F        18647.253    191 37676.505    37873.667    38504.501
197  TIM2+F+I      17808.558    192 36001.116    36200.879    36833.446
198  TIM2+F+G4     16489.718    192 33363.435    33563.198    34195.766
199  TIM2+F+I+G4   16468.464    193 33322.927    33525.316    34159.593
200  TIM2+F+R2     16855.201    193 34096.402    34298.791    34933.067
201  TIM2+F+R3     16540.879    195 33471.757    33679.475    34317.093
202  TIM2+F+R4     16488.752    197 33371.504    33584.652    34225.510
203  TIM2+F+R5     16487.519    199 33373.037    33591.718    34235.713
209  TIM3e         18809.659    188 37995.318    38184.822    38810.309
210  TIM3e+I       18150.326    189 36678.652    36870.684    37497.977
211  TIM3e+G4      17141.479    189 34660.959    34852.991    35480.284
212  TIM3e+I+G4    17125.229    190 34630.459    34825.043    35454.119
213  TIM3e+R2      17324.544    190 35029.088    35223.672    35852.748
214  TIM3e+R3      17155.439    192 34694.878    34894.640    35527.208
215  TIM3e+R4      17117.917    194 34623.835    34828.875    35464.835
216  TIM3e+R5      17117.271    196 34626.542    34836.961    35476.212
222  TIM3+F        18624.875    191 37631.750    37828.912    38459.746
223  TIM3+F+I      17780.467    192 35944.933    36144.696    36777.264
224  TIM3+F+G4     16492.342    192 33368.684    33568.447    34201.014
225  TIM3+F+I+G4   16465.012    193 33316.023    33518.412    34152.689
226  TIM3+F+R2     16842.848    193 34071.696    34274.085    34908.361
227  TIM3+F+R3     16533.949    195 33457.899    33665.616    34303.234
228  TIM3+F+R4     16480.902    197 33355.804    33568.952    34209.810
229  TIM3+F+R5     16478.410    199 33354.821    33573.502    34217.497
235  TVMe          18439.685    189 37257.370    37449.402    38076.695
236  TVMe+I        17849.122    190 36078.245    36272.829    36901.905
237  TVMe+G4       16829.575    190 34039.151    34233.735    34862.811
238  TVMe+I+G4     16814.049    191 34010.098    34207.259    34838.093
239  TVMe+R2       17022.161    191 34426.321    34623.482    35254.316
240  TVMe+R3       16843.473    193 34072.945    34275.335    34909.611
241  TVMe+R4       16807.593    195 34005.185    34212.903    34850.521
242  TVMe+R5       16806.575    197 34007.150    34220.297    34861.155
248  TVM+F         18523.258    192 37430.515    37630.278    38262.846
249  TVM+F+I       17728.070    193 35842.140    36044.529    36678.806
250  TVM+F+G4      16465.889    193 33317.777    33520.167    34154.443
251  TVM+F+I+G4    16444.086    194 33276.171    33481.212    34117.172
252  TVM+F+R2      16796.698    194 33981.396    34186.437    34822.397
253  TVM+F+R3      16513.690    196 33419.381    33629.800    34269.051
254  TVM+F+R4      16455.893    198 33307.786    33523.687    34166.127
255  TVM+F+R5      16454.947    200 33309.894    33531.381    34176.904
261  SYM           18347.968    190 37075.937    37270.521    37899.597
262  SYM+I         17751.639    191 35885.278    36082.439    36713.273
263  SYM+G4        16723.616    191 33829.233    34026.394    34657.228
264  SYM+I+G4      16710.717    192 33805.433    34005.196    34637.764
265  SYM+R2        16942.446    192 34268.893    34468.656    35101.223
266  SYM+R3        16735.112    194 33858.223    34063.264    34699.224
267  SYM+R4        16706.839    196 33805.678    34016.098    34655.349
268  SYM+R5        16704.503    198 33805.007    34020.908    34663.347
274  GTR+F         18507.441    193 37400.882    37603.272    38237.548
275  GTR+F+I       17713.700    194 35815.400    36020.441    36656.401
276  GTR+F+G4      16461.343    194 33310.685    33515.726    34151.686
277  GTR+F+I+G4    16435.090    195 33260.181    33467.898    34105.516
278  GTR+F+R2      16794.726    195 33979.453    34187.170    34824.788
279  GTR+F+R3      16497.733    197 33389.467    33602.614    34243.472
280  GTR+F+R4      16447.047    199 33292.094    33510.775    34154.770
281  GTR+F+R5      16445.856    201 33293.712    33518.032    34165.058
Akaike Information Criterion:           GTR+F+I+G4
Corrected Akaike Information Criterion: GTR+F+I+G4
Bayesian Information Criterion:         GTR+F+I+G4
Best-fit model: GTR+F+I+G4 chosen according to BIC

All model information printed to Pettalidae_16S_mafft.fasta.model.gz
CPU time for ModelFinder: 62.336 seconds (0h:1m:2s)
Wall-clock time for ModelFinder: 62.844 seconds (0h:1m:2s)
Generating 1000 samples for ultrafast bootstrap (seed: 25604)...

NOTE: 7 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
Thoroughly optimizing +I+G parameters from 10 start values...
Init pinv, alpha: 0.000, 1.000 / Estimate: 0.000, 0.511 / LogL: -16461.320
Init pinv, alpha: 0.027, 1.000 / Estimate: 0.139, 0.679 / LogL: -16435.089
Init pinv, alpha: 0.054, 1.000 / Estimate: 0.139, 0.680 / LogL: -16435.087
Init pinv, alpha: 0.082, 1.000 / Estimate: 0.139, 0.681 / LogL: -16435.084
Init pinv, alpha: 0.109, 1.000 / Estimate: 0.139, 0.684 / LogL: -16435.095
Init pinv, alpha: 0.136, 1.000 / Estimate: 0.140, 0.686 / LogL: -16435.096
Init pinv, alpha: 0.163, 1.000 / Estimate: 0.141, 0.688 / LogL: -16435.099
Init pinv, alpha: 0.190, 1.000 / Estimate: 0.141, 0.689 / LogL: -16435.105
Init pinv, alpha: 0.217, 1.000 / Estimate: 0.142, 0.690 / LogL: -16435.107
Init pinv, alpha: 0.245, 1.000 / Estimate: 0.142, 0.690 / LogL: -16435.111
Optimal pinv,alpha: 0.139, 0.681 / LogL: -16435.084

Parameters optimization took 4.581 sec
Computing ML distances based on estimated model parameters... 0.088 sec
Computing BIONJ tree...
0.048 seconds
Log-likelihood of BIONJ tree: -16425.576
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 1.038 second
Computing log-likelihood of 98 initial trees ... 2.145 seconds
Current best score: -16418.752

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -16382.784
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 2: -16375.528
Iteration 10 / LogL: -16391.751 / Time: 0h:0m:12s
Iteration 20 / LogL: -16382.865 / Time: 0h:0m:15s
Finish initializing candidate tree set (16)
Current best tree score: -16375.528 / CPU time: 10.948
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 30 / LogL: -16375.547 / Time: 0h:0m:19s (0h:0m:49s left)
Iteration 40 / LogL: -16395.307 / Time: 0h:0m:23s (0h:0m:37s left)
Iteration 50 / LogL: -16375.539 / Time: 0h:0m:27s (0h:0m:28s left)
Log-likelihood cutoff on original alignment: -16435.069
Iteration 60 / LogL: -16376.152 / Time: 0h:0m:30s (0h:0m:21s left)
Iteration 70 / LogL: -16387.948 / Time: 0h:0m:34s (0h:0m:16s left)
Iteration 80 / LogL: -16376.963 / Time: 0h:0m:38s (0h:0m:10s left)
Iteration 90 / LogL: -16376.690 / Time: 0h:0m:41s (0h:0m:5s left)
Iteration 100 / LogL: -16375.560 / Time: 0h:0m:45s (0h:0m:0s left)
Log-likelihood cutoff on original alignment: -16434.129
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
TREE SEARCH COMPLETED AFTER 103 ITERATIONS / Time: 0h:0m:46s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -16375.528
Optimal log-likelihood: -16375.527
Rate parameters:  A-C: 0.87750  A-G: 4.50627  A-T: 2.32192  C-G: 0.79233  C-T: 3.16550  G-T: 1.00000
Base frequencies:  A: 0.389  C: 0.079  G: 0.141  T: 0.390
Proportion of invariable sites: 0.140
Gamma shape alpha: 0.683
Parameters optimization took 1 rounds (0.052 sec)
BEST SCORE FOUND : -16375.527

Testing tree branches by SH-like aLRT with 1000 replicates...
1.318 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Pettalidae_16S_mafft.fasta.splits.nex
Total tree length: 19.467

Total number of iterations: 103
CPU time used for tree search: 41.388 sec (0h:0m:41s)
Wall-clock time used for tree search: 41.597 sec (0h:0m:41s)
Total CPU time used: 47.748 sec (0h:0m:47s)
Total wall-clock time used: 48.208 sec (0h:0m:48s)

Computing bootstrap consensus tree...
Reading input file Pettalidae_16S_mafft.fasta.splits.nex...
94 taxa and 499 splits.
Consensus tree written to Pettalidae_16S_mafft.fasta.contree
Reading input trees file Pettalidae_16S_mafft.fasta.contree
Log-likelihood of consensus tree: -16375.533

Analysis results written to: 
  IQ-TREE report:                Pettalidae_16S_mafft.fasta.iqtree
  Maximum-likelihood tree:       Pettalidae_16S_mafft.fasta.treefile
  Likelihood distances:          Pettalidae_16S_mafft.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Pettalidae_16S_mafft.fasta.splits.nex
  Consensus tree:                Pettalidae_16S_mafft.fasta.contree
  Screen log file:               Pettalidae_16S_mafft.fasta.log

Date and Time: Wed Jun 15 22:54:56 2022
